Exploring the microbial world To better protect our environment


Articles Scientifiques


Sophie Joimel, Baptiste Grard, Claire Chenu, Pénélope Cheval, Samuel Mondy, Mélanie Lelièvre, Apolline Auclerc, Laure Vieublé Gonod One green roof type, one Technosol, one ecological community
Simon Gibert, Véronique Edel-Hermann, Rayanti Moussa Mcolo, Elodie Gautheron, Joël Michel, Eric Bernaud, Nadine Gautheron, Jean-Marie Sol, Gery Capelle, Rachel Galland, Arnaud Bardon-Debats, Claudine Lambert, Christian Steinberg Risk assessment of Aphanomyces euteiches root rot disease: quantification of low inoculum densities in field soils using droplet digital PCR
Laurie Dunn , Christophe Lang, Nicolas Marilleau,Sébastien Terrat, Luc Biju-Duval, Mélanie Lelièvre, Solène Perrin, Nicolas Chemidlin Prévost-Bouré Soil microbial communities in the face of changing farming practices: A case study in an agricultural landscape in France


Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers and Christian Steinberg Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region 9-568 DOI=10.3389/fmicb.2018.00568
S. Sadet-Bourgeteau, S. Houot, S. Dequiedt, V. Nowak, V. Tardy, S. Terrat, D. Montenach, V. Mercier, B. Karimi, N. Chemidlin Prévost-Bouré, P.A. Maron Lasting effect of repeated application of organic waste products on microbial communities in arable soils


Terrat S, Horrigue W, Dequietd S, Saby NPA, Lelièvre M, Nowak V, et al. (2017) Mapping and predictive variations of soil bacterial richness across France. PLoS ONE12(10): e0186766.
Kanto Razanamalala, Tantely Razafimbelo, Pierre-Alain Maron, Lionel Ranjard, Nicolas Chemidlin, Mélanie Lelièvre, Samuel Dequiedt, Volaniaina H Ramaroson, Claire Marsden, Thierry Becquer, Jean Trap, Eric Blanchart, Laetitia Bernard Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar ISME
Naoise Nunan, Julie Leloup, Léo S. Ruamps, Valérie Pouteau & Claire Chenu Effects of habitat constraints on soil microbial community function Scientific Reports 7, Article number: 4280


Dequiedt, S., Maron, P.-A., and Ranjard, L. GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity Microbial Environmental Genomics (MEG), F. Martin, and S. Uroz, eds. (New York, NY: Springer)
Horrigue, W., Dequiedt, S., Chemidlin Prévost-Bouré, N., Jolivet, C., Saby, N.P.A., Arrouays, D., Bispo, A., Maron, P.-A., and Ranjard, L Predictive model of soil molecular microbial biomass Ecological Indicators 64, 203–211.


Terrat, S., Plassart, P., Bourgeois, E., Ferreira, S., Dequiedt, S., Adele-Dit-De-Renseville, N., Lemanceau, P., Bispo, A., Chabbi, A., Maron, P.-A., Ranjard L. Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition: Meta-barcoded evaluation of the ISO-11063 standard Microbial Biotechnology 8, 131–142


Lienhard P, Terrat S, Prevost-Boure NC, Nowak C, Régnier T, Sayphoummie S, Panyasiri K, Tivet F, Mathieu O, Leveque J, Maron P-A, Ranjard L. 2014. Pyrosequencing evidences the differential impact of soil disturbance and cropping intensity on soil bacterial and fungal diversity in Laos tropical grassland. AGRONOMY FOR SUSTAINABLE DEVELOPMENT 34:525-533.
Lienhard P, Terrat S, Mathieu O, Leveque J, Prevost-Boure NC, Nowak V, Régnier T, Faivre C, Sayphoummie S, Panyasiri K, others. 2014. Soil microbial diversity and C turnover modified by tillage and cropping in Laos tropical grassland. Environmental Chemistry Letters 1–8.
V Tardy, O Mathieu, J Leveque, S Terrat, A Chabbi, P Lemanceau, L Ranjard, PA Maron. 2014. Stability of soil microbial structure and activity depends on microbial diversity Environ Microbiol Rep. 2014 Apr;6(2):173-83. doi: 10.1111/1758-2229
F Constancias, N Chemidlin Prévost-Bouré, S Terrat, S Aussems, V Nowak, J.-P. Guillemin, L Biju-Duval, A Navel, J Martins, PA Maron et L Ranjard. 2014. Microscale evidence for high decrease of soil bacterial density and diversity by cropping. Agronomy for Sustainable Development (in press)
Deredjian A, Colinon Dupuech C, Ranjard L, Dequiedt S, Hartmann A, Brothier E, Youenon B, Cournoyer B, Hien E, Saby NPA, Houot S, Jolivet C, Nazaret S Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment Cellular and Infection Microbiology


Zancarini A, Mougel C, Terrat S, Salon C, Munier-Jolain N. 2013. Combining ecophysiological and microbial ecological approaches to study the relationship between Medicago truncatula genotypes and their associated rhizosphere bacterial communities. PLANT AND SOIL 365:183–199.
Ranjard L, Dequiedt S, Prevost-Boure NC, Thioulouse J, Saby NPA, Lelievre M, Maron PA, Morin FER, Bispo A, Jolivet C, Arrouays D, Lemanceau P. 2013. Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity. NATURE COMMUNICATIONS 4.
Pascault N, Ranjard L, Kaisermann A, Bachar D, Christen R, Terrat S, Mathieu O, Leveque J, Mougel C, Henault C, others. 2013. . Stimulation of different functional groups of bacteria by various plant residues as a driver of soil priming effect. Ecosystems 1–13.
Mercier A, Dictor M-C, Harris-Hellal J, Breeze D, Mouvet C. 2013. Distinct bacterial community structure of 3 tropical volcanic soils from banana plantations contaminated with chlordecone in Guadeloupe (French West Indies). Chemosphere.
Locatelli A, Depret G, Jolivet C, Henry S, Dequiedt S, Piveteau P, Hartmann A. 2013. Nation-wide study of the occurrence of Listeria monocytogenes in French soils using culture-based and molecular detection methods. Journal of microbiological methods.
Lienhard P, Tivet F, Chabanne A, Dequiedt S, Lelievre M, Sayphoummie S, Leudphanane B, Prevost-Boure NC, Seguy L, Maron P-A, Ranjard L. 2013. No-till and cover crops shift soil microbial abundance and diversity in Laos tropical grasslands. AGRONOMY FOR SUSTAINABLE DEVELOPMENT 33:375–384.
Colinon C, Deredjian A, Hien E, Brothier E, Bouziri L, Cournoyer B, Hartman A, Henry S, Jolivet C, Ranjard L, Nazaret S. 2013. Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay. JOURNAL OF APPLIED MICROBIOLOGY 114:1734–1749.
Morin F, Dequiedt S, Koyao-Darinest V, Toutain B, Terrat S, Lelievre M, Nowak V, Faivre-Primot C, Lemanceau P, Maron P-A, Ranjard L MicroSol database © , le Premier Système d ’ Information Environnemental sur la Microbiologie des Sols


Terrat S, Christen R, Dequiedt S, Lelievre M, Nowak V, Regnier T, Bachar D, Plassart P, Wincker P, Jolivet C, Bispo A, Lemanceau P, Maron P-A, Mougel C, Ranjard L. 2012. Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure. MICROBIAL BIOTECHNOLOGY 5:135–141.
Plassart P, Terrat S, Thomson B, Griffiths R, Dequiedt S, Lelievre M, Regnier T, Nowak V, Bailey M, Lemanceau P, Bispo A, Chabbi A, Maron P-A, Mougel C, Ranjard L. 2012. Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure. PLOS ONE 7.
Peyretaillade E, Parisot N, Polonais V, Terrat S, Denonfoux J, Dugat-Bony E, Wawrzyniak I, Biderre-Petit C, Mahul A, Rimour S, Goncalves O, Bornes S, Delbac F, Chebance B, Duprat S, Samson G, Katinka M, Weissenbach J, Wincker P, Peyret P. 2012. Annotation of microsporidian genomes using transcriptional signals. NATURE COMMUNICATIONS 3.
Goge F, Joffre R, Jolivet C, Ross I, Ranjard L. 2012. Optimization criteria in sample selection step of local regression for quantitative analysis of large soil NIRS database. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS 110:168–176.


Prevost-Boure NC, Christen R, Dequiedt S, Mougel C, Lelievre M, Jolivet C, Shahbazkia HR, Guillou L, Arrouays D, Ranjard L. 2011. Validation and Application of a PCR Primer Set to Quantify Fungal Communities in the Soil Environment by Real-Time Quantitative PCR. PLOS ONE 6.
Dequiedt S, Saby NPA, Lelievre M, Jolivet C, Thioulouse J, Toutain B, Arrouays D, Bispo A, Lemanceau P, Ranjard L. 2011. Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management. GLOBAL ECOLOGY AND BIOGEOGRAPHY 20:641–652.
Bru D, Ramette A, Saby NPA, Dequiedt S, Ranjard L, Jolivet C, Arrouays D, Philippot L. 2011. Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale. ISME JOURNAL 5:532–542.


Ranjard L, Dequiedt S, Jolivet C, Saby NPA, Thioulouse J, Harmand J, Loisel P, Rapaport A, Fall S, Simonet P, Joffre R, Boure NC-P, Maron P-A, Mougel C, Martin MP, Toutain B, Arrouays D, Lemanceau P. 2010. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. AGRONOMY FOR SUSTAINABLE DEVELOPMENT 30:359–365.
Hidri Y, Bouziri L, Maron P-A, Anane M, Jedidi N, Hassan A, Ranjard L. 2010. Soil DNA evidence for altered microbial diversity after long-term application of municipal wastewater. AGRONOMY FOR SUSTAINABLE DEVELOPMENT 30:423–431.


Ranjard L, Dequiedt S, Lelievre M, Maron PA, Mougel C, Morin F, Lemanceau P. 2009. Platform GenoSol: a new tool for conserving and exploring soil microbial diversity ENVIRONMENTAL MICROBIOLOGY REPORTS 1:97–99.
Gardi C, Montanarella L, Arrouays D, Bispo A, Lemanceau P, Jolivet C, Mulder C, Ranjard L, Roembke J, Rutgers M, Menta C. 2009. Soil biodiversity monitoring in Europe: ongoing activities and challenges. EUROPEAN JOURNAL OF SOIL SCIENCE 60:807–819.
Dequiedt S, Thioulouse J, Jolivet C, Saby NPA, Lelievre M, Maron P-A, Martin MP, Prevost-Boure NC, Toutain B, Arrouays D, Lemanceau P, Ranjard L. 2009. Biogeographical patterns of soil bacterial communities. ENVIRONMENTAL MICROBIOLOGY REPORTS 1:251–255.